No. words: 873; after pruning: 847


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 4.9 (1,1:284)  261  0.00 0.72 0.00  USDA008F_G10_BG313767Ld09P017E02P017E08F1_068.ab1        9   284 (143)  C USDA008R_G10_BG313767Ld09P017E02P017E08R1_068.ab1   (168)   278     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  132 nodes

 68 str. conn. components

Path
    1  C USDA008R_G10_BG313767Ld09P017E02P017E08R1_068.ab1   446 
  192    USDA008F_G10_BG313767Ld09P017E02P017E08F1_068.ab1    31 
  200  C USDA008R_G10_BG313767Ld09P017E02P017E08R1_068.ab1   247 
  216    USDA008F_G10_BG313767Ld09P017E02P017E08F1_068.ab1    54 
  228  C USDA008R_G10_BG313767Ld09P017E02P017E08R1_068.ab1   219 
  232    USDA008F_G10_BG313767Ld09P017E02P017E08F1_068.ab1    70 
  248  C USDA008R_G10_BG313767Ld09P017E02P017E08R1_068.ab1   199 
  256    USDA008F_G10_BG313767Ld09P017E02P017E08F1_068.ab1    94 
  268  C USDA008R_G10_BG313767Ld09P017E02P017E08R1_068.ab1   179 
  272    USDA008F_G10_BG313767Ld09P017E02P017E08F1_068.ab1   110 
  276  C USDA008R_G10_BG313767Ld09P017E02P017E08R1_068.ab1   171 
  280    USDA008F_G10_BG313767Ld09P017E02P017E08F1_068.ab1   118 
Contig length: old 588, new 589

Contig length: old 589, new 589
New start: 0