No. words: 1107; after pruning: 1081


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.6 (1,1:488)  476  0.00 0.00 0.21  USDA010F_D03_BG314157As02P017F02P017F08F1_025.ab1        5   489 (62)  C USDA010R_D03_BG314157As02P017F02P017F08R1_025.ab1   (72)   484     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA010R_D03_BG314157As02P017F02P017F08R1_025.ab1   556 
  180    USDA010F_D03_BG314157As02P017F02P017F08F1_025.ab1   112 
  184  C USDA010R_D03_BG314157As02P017F02P017F08R1_025.ab1   373 
  208    USDA010F_D03_BG314157As02P017F02P017F08F1_025.ab1   140 
  220  C USDA010R_D03_BG314157As02P017F02P017F08R1_025.ab1   337 
  228    USDA010F_D03_BG314157As02P017F02P017F08F1_025.ab1   160 
  368  C USDA010R_D03_BG314157As02P017F02P017F08R1_025.ab1   189 
  388    USDA010F_D03_BG314157As02P017F02P017F08F1_025.ab1   320 
  428  C USDA010R_D03_BG314157As02P017F02P017F08R1_025.ab1   129 
  444    USDA010F_D03_BG314157As02P017F02P017F08F1_025.ab1   376 
  456  C USDA010R_D03_BG314157As02P017F02P017F08R1_025.ab1   101 
  472    USDA010F_D03_BG314157As02P017F02P017F08F1_025.ab1   404 
  484  C USDA010R_D03_BG314157As02P017F02P017F08R1_025.ab1    73 
  496    USDA010F_D03_BG314157As02P017F02P017F08F1_025.ab1   428 
  516  C USDA010R_D03_BG314157As02P017F02P017F08R1_025.ab1    41 
  520    USDA010F_D03_BG314157As02P017F02P017F08F1_025.ab1   452 
Contig length: old 618, new 619

Contig length: old 619, new 619
New start: 0