No. words: 1154; after pruning: 1128


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:521)  517  0.00 0.00 0.00  USDA010F_F03_BG314157At02P017F02P017F08F1_021.ab1        1   522 (54)  C USDA010R_F03_BG314157At02P017F02P017F08R1_021.ab1   (56)   522     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C USDA010R_F03_BG314157At02P017F02P017F08R1_021.ab1   578 
  117    USDA010F_F03_BG314157At02P017F02P017F08F1_021.ab1    61 
  137  C USDA010R_F03_BG314157At02P017F02P017F08R1_021.ab1   442 
  181    USDA010F_F03_BG314157At02P017F02P017F08F1_021.ab1   125 
Contig length: old 632, new 632

Contig length: old 632, new 632
New start: 0