No. words: 1365; after pruning: 1339


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:541)  535  0.00 0.00 0.00  USDA010F_G03_BG314157Ld01P017F02P017F08F1_019.ab1        1   542 (135)  C USDA010R_G03_BG314157Ld01P017F02P017F08R1_019.ab1   (146)   542     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C USDA010R_G03_BG314157Ld01P017F02P017F08R1_019.ab1   688 
  194    USDA010F_G03_BG314157Ld01P017F02P017F08F1_019.ab1    48 
  234  C USDA010R_G03_BG314157Ld01P017F02P017F08R1_019.ab1   455 
  278    USDA010F_G03_BG314157Ld01P017F02P017F08F1_019.ab1   132 
  286  C USDA010R_G03_BG314157Ld01P017F02P017F08R1_019.ab1   403 
  342    USDA010F_G03_BG314157Ld01P017F02P017F08F1_019.ab1   196 
Contig length: old 823, new 823

Contig length: old 823, new 823
New start: 0