No. words: 1430; after pruning: 1404


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.0 (1,1:554)  548  0.00 0.00 0.00  USDA010F_H03_BG314157Ld02P017F02P017F08F1_017.ab1        3   555 (146)  C USDA010R_H03_BG314157Ld02P017F02P017F08R1_017.ab1   (176)   553     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA010R_H03_BG314157Ld02P017F02P017F08R1_017.ab1   729 
  224    USDA010F_H03_BG314157Ld02P017F02P017F08F1_017.ab1    50 
  232  C USDA010R_H03_BG314157Ld02P017F02P017F08R1_017.ab1   498 
  236    USDA010F_H03_BG314157Ld02P017F02P017F08F1_017.ab1    62 
  244  C USDA010R_H03_BG314157Ld02P017F02P017F08R1_017.ab1   486 
  280    USDA010F_H03_BG314157Ld02P017F02P017F08F1_017.ab1   106 
  320  C USDA010R_H03_BG314157Ld02P017F02P017F08R1_017.ab1   410 
  384    USDA010F_H03_BG314157Ld02P017F02P017F08F1_017.ab1   210 
  632  C USDA010R_H03_BG314157Ld02P017F02P017F08R1_017.ab1    98 
  636    USDA010F_H03_BG314157Ld02P017F02P017F08F1_017.ab1   462 
Contig length: old 875, new 875

Contig length: old 875, new 875
New start: 0