No. words: 1413; after pruning: 1387


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:543)  538  0.00 0.00 0.00  USDA010F_A04_BG314157Ld03P017F02P017F08F1_032.ab1        1   544 (175)  C USDA010R_A04_BG314157Ld03P017F02P017F08R1_032.ab1   (150)   544     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C USDA010R_A04_BG314157Ld03P017F02P017F08R1_032.ab1   694 
  346    USDA010F_A04_BG314157Ld03P017F02P017F08F1_032.ab1   196 
  490  C USDA010R_A04_BG314157Ld03P017F02P017F08R1_032.ab1   205 
  498    USDA010F_A04_BG314157Ld03P017F02P017F08F1_032.ab1   348 
  506  C USDA010R_A04_BG314157Ld03P017F02P017F08R1_032.ab1   189 
  578    USDA010F_A04_BG314157Ld03P017F02P017F08F1_032.ab1   428 
  590  C USDA010R_A04_BG314157Ld03P017F02P017F08R1_032.ab1   105 
  606    USDA010F_A04_BG314157Ld03P017F02P017F08F1_032.ab1   456 
  658  C USDA010R_A04_BG314157Ld03P017F02P017F08R1_032.ab1    37 
  662    USDA010F_A04_BG314157Ld03P017F02P017F08F1_032.ab1   512 
Contig length: old 869, new 869

Contig length: old 869, new 869
New start: 0