No. words: 1419; after pruning: 1393


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.9 (1,1:548)  537  0.18 0.00 0.00  USDA010F_C04_BG314157Ld05P017F02P017F08F1_028.ab1        3   549 (150)  C USDA010R_C04_BG314157Ld05P017F02P017F08R1_028.ab1   (173)   547     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C USDA010R_C04_BG314157Ld05P017F02P017F08R1_028.ab1   720 
  197    USDA010F_C04_BG314157Ld05P017F02P017F08F1_028.ab1    26 
  201  C USDA010R_C04_BG314157Ld05P017F02P017F08R1_028.ab1   520 
  229    USDA010F_C04_BG314157Ld05P017F02P017F08F1_028.ab1    58 
  237  C USDA010R_C04_BG314157Ld05P017F02P017F08R1_028.ab1   484 
  309    USDA010F_C04_BG314157Ld05P017F02P017F08F1_028.ab1   138 
  593  C USDA010R_C04_BG314157Ld05P017F02P017F08R1_028.ab1   128 
  605    USDA010F_C04_BG314157Ld05P017F02P017F08F1_028.ab1   434 
Contig length: old 870, new 870

Contig length: old 870, new 870
New start: 0