No. words: 1409; after pruning: 1383


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:542)  537  0.00 0.00 0.00  USDA010F_D04_BG314157Ld06P017F02P017F08F1_026.ab1        1   543 (150)  C USDA010R_D04_BG314157Ld06P017F02P017F08R1_026.ab1   (173)   543     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C USDA010R_D04_BG314157Ld06P017F02P017F08R1_026.ab1   716 
  209    USDA010F_D04_BG314157Ld06P017F02P017F08F1_026.ab1    36 
  237  C USDA010R_D04_BG314157Ld06P017F02P017F08R1_026.ab1   480 
  249    USDA010F_D04_BG314157Ld06P017F02P017F08F1_026.ab1    76 
  261  C USDA010R_D04_BG314157Ld06P017F02P017F08R1_026.ab1   456 
  273    USDA010F_D04_BG314157Ld06P017F02P017F08F1_026.ab1   100 
  281  C USDA010R_D04_BG314157Ld06P017F02P017F08R1_026.ab1   436 
  305    USDA010F_D04_BG314157Ld06P017F02P017F08F1_026.ab1   132 
  321  C USDA010R_D04_BG314157Ld06P017F02P017F08R1_026.ab1   396 
  353    USDA010F_D04_BG314157Ld06P017F02P017F08F1_026.ab1   180 
Contig length: old 866, new 866

Contig length: old 866, new 866
New start: 0