No. words: 1373; after pruning: 1347


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.9 (1,1:549)  542  0.00 0.00 0.00  USDA010F_F04_BG314157Ld08P017F02P017F08F1_022.ab1        3   550 (130)  C USDA010R_F04_BG314157Ld08P017F02P017F08R1_022.ab1   (145)   548     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA010R_F04_BG314157Ld08P017F02P017F08R1_022.ab1   693 
  205    USDA010F_F04_BG314157Ld08P017F02P017F08F1_022.ab1    62 
  213  C USDA010R_F04_BG314157Ld08P017F02P017F08R1_022.ab1   481 
  277    USDA010F_F04_BG314157Ld08P017F02P017F08F1_022.ab1   134 
  293  C USDA010R_F04_BG314157Ld08P017F02P017F08R1_022.ab1   401 
  577    USDA010F_F04_BG314157Ld08P017F02P017F08F1_022.ab1   434 
Contig length: old 823, new 823

Contig length: old 823, new 823
New start: 0