No. words: 1427; after pruning: 1401


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:553)  548  0.00 0.00 0.00  USDA010F_H04_BG314157Ld10P017F02P017F08F1_018.ab1        1   554 (170)  C USDA010R_H04_BG314157Ld10P017F02P017F08R1_018.ab1   (149)   554     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA010R_H04_BG314157Ld10P017F02P017F08R1_018.ab1   703 
  181    USDA010F_H04_BG314157Ld10P017F02P017F08F1_018.ab1    32 
  213  C USDA010R_H04_BG314157Ld10P017F02P017F08R1_018.ab1   491 
  225    USDA010F_H04_BG314157Ld10P017F02P017F08F1_018.ab1    76 
  237  C USDA010R_H04_BG314157Ld10P017F02P017F08R1_018.ab1   467 
  273    USDA010F_H04_BG314157Ld10P017F02P017F08F1_018.ab1   124 
  301  C USDA010R_H04_BG314157Ld10P017F02P017F08R1_018.ab1   403 
  337    USDA010F_H04_BG314157Ld10P017F02P017F08F1_018.ab1   188 
Contig length: old 873, new 873

Contig length: old 873, new 873
New start: 0