No. words: 1027; after pruning: 1001


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.5 (1,1:469)  449  0.00 0.43 0.00  USDA025F_F11_BG314157Sn24P043G10P017F021F1_085.ab1        5   469 (51)  C USDA025R_F11_BG314157Sn24P043G10P017F021R1_085.ab1   (40)   467     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C USDA025R_F11_BG314157Sn24P043G10P017F021R1_085.ab1   507 
  359    USDA025F_F11_BG314157Sn24P043G10P017F021F1_085.ab1   321 
  367  C USDA025R_F11_BG314157Sn24P043G10P017F021R1_085.ab1   141 
  407    USDA025F_F11_BG314157Sn24P043G10P017F021F1_085.ab1   369 
  455  C USDA025R_F11_BG314157Sn24P043G10P017F021R1_085.ab1    53 
  479    USDA025F_F11_BG314157Sn24P043G10P017F021F1_085.ab1   441 
Contig length: old 557, new 558

Contig length: old 558, new 558
New start: 0