No. words: 1022; after pruning: 996


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:466)  455  0.00 0.21 0.00  USDA025F_G11_BG314157Sn25P043G10P017F021F1_083.ab1        1   467 (47)  C USDA025R_G11_BG314157Sn25P043G10P017F021R1_083.ab1   (40)   468     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C USDA025R_G11_BG314157Sn25P043G10P017F021R1_083.ab1   508 
  162    USDA025F_G11_BG314157Sn25P043G10P017F021F1_083.ab1   121 
  186  C USDA025R_G11_BG314157Sn25P043G10P017F021R1_083.ab1   323 
  202    USDA025F_G11_BG314157Sn25P043G10P017F021F1_083.ab1   161 
  246  C USDA025R_G11_BG314157Sn25P043G10P017F021R1_083.ab1   263 
  330    USDA025F_G11_BG314157Sn25P043G10P017F021F1_083.ab1   289 
  334  C USDA025R_G11_BG314157Sn25P043G10P017F021R1_083.ab1   175 
  354    USDA025F_G11_BG314157Sn25P043G10P017F021F1_083.ab1   313 
  366  C USDA025R_G11_BG314157Sn25P043G10P017F021R1_083.ab1   143 
  406    USDA025F_G11_BG314157Sn25P043G10P017F021F1_083.ab1   365 
  422  C USDA025R_G11_BG314157Sn25P043G10P017F021R1_083.ab1    87 
  438    USDA025F_G11_BG314157Sn25P043G10P017F021F1_083.ab1   397 
  446  C USDA025R_G11_BG314157Sn25P043G10P017F021R1_083.ab1    63 
  482    USDA025F_G11_BG314157Sn25P043G10P017F021F1_083.ab1   441 
Contig length: old 555, new 555

Contig length: old 555, new 555
New start: 0