No. words: 1021; after pruning: 981


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:468)  444  0.00 0.64 0.21  USDA025F_A12_BG314157Sn26P043G10P017F021F1_096.ab1        1   469 (48)  C USDA025R_A12_BG314157Sn26P043G10P017F021R1_096.ab1   (33)   471     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C USDA025R_A12_BG314157Sn26P043G10P017F021R1_096.ab1   504 
  356    USDA025F_A12_BG314157Sn26P043G10P017F021F1_096.ab1   320 
  364  C USDA025R_A12_BG314157Sn26P043G10P017F021R1_096.ab1   141 
  404    USDA025F_A12_BG314157Sn26P043G10P017F021F1_096.ab1   368 
  424  C USDA025R_A12_BG314157Sn26P043G10P017F021R1_096.ab1    81 
  440    USDA025F_A12_BG314157Sn26P043G10P017F021F1_096.ab1   404 
  448  C USDA025R_A12_BG314157Sn26P043G10P017F021R1_096.ab1    57 
  479    USDA025F_A12_BG314157Sn26P043G10P017F021F1_096.ab1   444 
  491  C USDA025R_A12_BG314157Sn26P043G10P017F021R1_096.ab1    14 
  495    USDA025F_A12_BG314157Sn26P043G10P017F021F1_096.ab1   460 
Contig length: old 552, new 552

Contig length: old 552, new 552
New start: 0