No. words: 1013; after pruning: 987


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:460)  449  0.00 0.22 0.00  USDA025F_B12_BG314157Sn27P043G10P017F021F1_094.ab1        1   461 (45)  C USDA025R_B12_BG314157Sn27P043G10P017F021R1_094.ab1   (45)   462     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C USDA025R_B12_BG314157Sn27P043G10P017F021R1_094.ab1   507 
  200    USDA025F_B12_BG314157Sn27P043G10P017F021F1_094.ab1   154 
  272  C USDA025R_B12_BG314157Sn27P043G10P017F021R1_094.ab1   236 
  356    USDA025F_B12_BG314157Sn27P043G10P017F021F1_094.ab1   310 
  364  C USDA025R_B12_BG314157Sn27P043G10P017F021R1_094.ab1   144 
  404    USDA025F_B12_BG314157Sn27P043G10P017F021F1_094.ab1   358 
  424  C USDA025R_B12_BG314157Sn27P043G10P017F021R1_094.ab1    84 
  444    USDA025F_B12_BG314157Sn27P043G10P017F021F1_094.ab1   398 
  448  C USDA025R_B12_BG314157Sn27P043G10P017F021R1_094.ab1    60 
  480    USDA025F_B12_BG314157Sn27P043G10P017F021F1_094.ab1   434 
Contig length: old 552, new 552

Contig length: old 552, new 552
New start: 0