No. words: 1024; after pruning: 998


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.1 (1,1:468)  448  0.00 0.64 0.00  USDA025F_C12_BG314157Sn28P043G10P017F021F1_092.ab1        1   468 (47)  C USDA025R_C12_BG314157Sn28P043G10P017F021R1_092.ab1   (38)   471     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C USDA025R_C12_BG314157Sn28P043G10P017F021R1_092.ab1   509 
   95    USDA025F_C12_BG314157Sn28P043G10P017F021F1_092.ab1    54 
  107  C USDA025R_C12_BG314157Sn28P043G10P017F021R1_092.ab1   403 
  207    USDA025F_C12_BG314157Sn28P043G10P017F021F1_092.ab1   166 
  215  C USDA025R_C12_BG314157Sn28P043G10P017F021R1_092.ab1   295 
  359    USDA025F_C12_BG314157Sn28P043G10P017F021F1_092.ab1   318 
  367  C USDA025R_C12_BG314157Sn28P043G10P017F021R1_092.ab1   143 
  399    USDA025F_C12_BG314157Sn28P043G10P017F021F1_092.ab1   358 
  423  C USDA025R_C12_BG314157Sn28P043G10P017F021R1_092.ab1    87 
  431    USDA025F_C12_BG314157Sn28P043G10P017F021F1_092.ab1   390 
  435  C USDA025R_C12_BG314157Sn28P043G10P017F021R1_092.ab1    75 
  439    USDA025F_C12_BG314157Sn28P043G10P017F021F1_092.ab1   398 
  455  C USDA025R_C12_BG314157Sn28P043G10P017F021R1_092.ab1    55 
  483    USDA025F_C12_BG314157Sn28P043G10P017F021F1_092.ab1   442 
Contig length: old 555, new 556

Contig length: old 556, new 556
New start: 0