No. words: 1018; after pruning: 978


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:467)  447  0.00 0.43 0.21  USDA025F_D12_BG314157Sn29P043G10P017F021F1_090.ab1        1   468 (44)  C USDA025R_D12_BG314157Sn29P043G10P017F021R1_090.ab1   (37)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C USDA025R_D12_BG314157Sn29P043G10P017F021R1_090.ab1   506 
  404    USDA025F_D12_BG314157Sn29P043G10P017F021F1_090.ab1   365 
  420  C USDA025R_D12_BG314157Sn29P043G10P017F021R1_090.ab1    87 
  440    USDA025F_D12_BG314157Sn29P043G10P017F021F1_090.ab1   401 
  452  C USDA025R_D12_BG314157Sn29P043G10P017F021R1_090.ab1    55 
  483    USDA025F_D12_BG314157Sn29P043G10P017F021F1_090.ab1   445 
Contig length: old 550, new 550

Contig length: old 550, new 550
New start: 0