No. words: 1018; after pruning: 978


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:464)  446  0.22 0.22 0.22  USDA025F_E12_BG314157Sn30P043G10P017F021F1_088.ab1        1   465 (43)  C USDA025R_E12_BG314157Sn30P043G10P017F021R1_088.ab1   (45)   465     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C USDA025R_E12_BG314157Sn30P043G10P017F021R1_088.ab1   510 
  200    USDA025F_E12_BG314157Sn30P043G10P017F021F1_088.ab1   154 
  244  C USDA025R_E12_BG314157Sn30P043G10P017F021R1_088.ab1   267 
  356    USDA025F_E12_BG314157Sn30P043G10P017F021F1_088.ab1   310 
  368  C USDA025R_E12_BG314157Sn30P043G10P017F021R1_088.ab1   143 
  404    USDA025F_E12_BG314157Sn30P043G10P017F021F1_088.ab1   358 
  420  C USDA025R_E12_BG314157Sn30P043G10P017F021R1_088.ab1    91 
  436    USDA025F_E12_BG314157Sn30P043G10P017F021F1_088.ab1   390 
  452  C USDA025R_E12_BG314157Sn30P043G10P017F021R1_088.ab1    59 
  483    USDA025F_E12_BG314157Sn30P043G10P017F021F1_088.ab1   438 
Contig length: old 553, new 553

Contig length: old 553, new 553
New start: 0