No. words: 1009; after pruning: 983


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.3 (1,1:458)  443  0.00 0.22 0.00  USDA025F_F12_BG314157Sn31P043G10P017F021F1_086.ab1        5   459 (44)  C USDA025R_F12_BG314157Sn31P043G10P017F021R1_086.ab1   (50)   456     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C USDA025R_F12_BG314157Sn31P043G10P017F021R1_086.ab1   506 
  200    USDA025F_F12_BG314157Sn31P043G10P017F021F1_086.ab1   153 
  344  C USDA025R_F12_BG314157Sn31P043G10P017F021R1_086.ab1   163 
  356    USDA025F_F12_BG314157Sn31P043G10P017F021F1_086.ab1   309 
  364  C USDA025R_F12_BG314157Sn31P043G10P017F021R1_086.ab1   143 
  404    USDA025F_F12_BG314157Sn31P043G10P017F021F1_086.ab1   357 
  420  C USDA025R_F12_BG314157Sn31P043G10P017F021R1_086.ab1    87 
  480    USDA025F_F12_BG314157Sn31P043G10P017F021F1_086.ab1   433 
Contig length: old 550, new 550

Contig length: old 550, new 550
New start: 0