No. words: 1025; after pruning: 999


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.7 (1,1:458)  443  0.00 0.22 0.00  USDA025F_G12_BG314157Sn32P043G10P017F021F1_084.ab1        5   459 (60)  C USDA025R_G12_BG314157Sn32P043G10P017F021R1_084.ab1   (50)   456     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C USDA025R_G12_BG314157Sn32P043G10P017F021R1_084.ab1   506 
  144    USDA025F_G12_BG314157Sn32P043G10P017F021F1_084.ab1    97 
  148  C USDA025R_G12_BG314157Sn32P043G10P017F021R1_084.ab1   359 
  208    USDA025F_G12_BG314157Sn32P043G10P017F021F1_084.ab1   161 
  244  C USDA025R_G12_BG314157Sn32P043G10P017F021R1_084.ab1   263 
  356    USDA025F_G12_BG314157Sn32P043G10P017F021F1_084.ab1   309 
  364  C USDA025R_G12_BG314157Sn32P043G10P017F021R1_084.ab1   143 
  404    USDA025F_G12_BG314157Sn32P043G10P017F021F1_084.ab1   357 
  416  C USDA025R_G12_BG314157Sn32P043G10P017F021R1_084.ab1    91 
  440    USDA025F_G12_BG314157Sn32P043G10P017F021F1_084.ab1   393 
  452  C USDA025R_G12_BG314157Sn32P043G10P017F021R1_084.ab1    55 
  492    USDA025F_G12_BG314157Sn32P043G10P017F021F1_084.ab1   445 
Contig length: old 566, new 566

Contig length: old 566, new 566
New start: 0