No. words: 1020; after pruning: 994


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.1 (1,1:467)  447  0.00 0.64 0.00  USDA025F_A10_BG314157Ta11P043G10P017F021F1_080.ab1        1   467 (46)  C USDA025R_A10_BG314157Ta11P043G10P017F021R1_080.ab1   (37)   470     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C USDA025R_A10_BG314157Ta11P043G10P017F021R1_080.ab1   507 
  104    USDA025F_A10_BG314157Ta11P043G10P017F021F1_080.ab1    64 
  136  C USDA025R_A10_BG314157Ta11P043G10P017F021R1_080.ab1   372 
  204    USDA025F_A10_BG314157Ta11P043G10P017F021F1_080.ab1   164 
  212  C USDA025R_A10_BG314157Ta11P043G10P017F021R1_080.ab1   296 
  340    USDA025F_A10_BG314157Ta11P043G10P017F021F1_080.ab1   300 
  344  C USDA025R_A10_BG314157Ta11P043G10P017F021R1_080.ab1   164 
  356    USDA025F_A10_BG314157Ta11P043G10P017F021F1_080.ab1   316 
  372  C USDA025R_A10_BG314157Ta11P043G10P017F021R1_080.ab1   136 
  380    USDA025F_A10_BG314157Ta11P043G10P017F021F1_080.ab1   340 
  420  C USDA025R_A10_BG314157Ta11P043G10P017F021R1_080.ab1    88 
  432    USDA025F_A10_BG314157Ta11P043G10P017F021F1_080.ab1   392 
  472  C USDA025R_A10_BG314157Ta11P043G10P017F021R1_080.ab1    36 
  480    USDA025F_A10_BG314157Ta11P043G10P017F021F1_080.ab1   440 
Contig length: old 552, new 553

Contig length: old 553, new 553
New start: 0