No. words: 1023; after pruning: 997


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:465)  458  0.00 0.00 0.00  USDA025F_B10_BG314157Ta12P043G10P017F021F1_078.ab1        1   466 (51)  C USDA025R_B10_BG314157Ta12P043G10P017F021R1_078.ab1   (40)   466     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C USDA025R_B10_BG314157Ta12P043G10P017F021R1_078.ab1   506 
  108    USDA025F_B10_BG314157Ta12P043G10P017F021F1_078.ab1    68 
  128  C USDA025R_B10_BG314157Ta12P043G10P017F021R1_078.ab1   379 
  136    USDA025F_B10_BG314157Ta12P043G10P017F021F1_078.ab1    96 
  140  C USDA025R_B10_BG314157Ta12P043G10P017F021R1_078.ab1   367 
  160    USDA025F_B10_BG314157Ta12P043G10P017F021F1_078.ab1   120 
  172  C USDA025R_B10_BG314157Ta12P043G10P017F021R1_078.ab1   335 
  224    USDA025F_B10_BG314157Ta12P043G10P017F021F1_078.ab1   184 
  228  C USDA025R_B10_BG314157Ta12P043G10P017F021R1_078.ab1   279 
  304    USDA025F_B10_BG314157Ta12P043G10P017F021F1_078.ab1   264 
  308  C USDA025R_B10_BG314157Ta12P043G10P017F021R1_078.ab1   199 
  356    USDA025F_B10_BG314157Ta12P043G10P017F021F1_078.ab1   316 
  380  C USDA025R_B10_BG314157Ta12P043G10P017F021R1_078.ab1   127 
  400    USDA025F_B10_BG314157Ta12P043G10P017F021F1_078.ab1   360 
  436  C USDA025R_B10_BG314157Ta12P043G10P017F021R1_078.ab1    71 
  440    USDA025F_B10_BG314157Ta12P043G10P017F021F1_078.ab1   400 
  452  C USDA025R_B10_BG314157Ta12P043G10P017F021R1_078.ab1    55 
  480    USDA025F_B10_BG314157Ta12P043G10P017F021F1_078.ab1   440 
Contig length: old 557, new 557

Contig length: old 557, new 557
New start: 0