No. words: 1010; after pruning: 984


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.2 (1,1:453)  442  0.00 0.00 0.00  USDA025F_C10_BG314157Ta13P043G10P017F021F1_076.ab1        5   454 (45)  C USDA025R_C10_BG314157Ta13P043G10P017F021R1_076.ab1   (61)   450     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C USDA025R_C10_BG314157Ta13P043G10P017F021R1_076.ab1   511 
   93    USDA025F_C10_BG314157Ta13P043G10P017F021F1_076.ab1    36 
  133  C USDA025R_C10_BG314157Ta13P043G10P017F021R1_076.ab1   379 
  137    USDA025F_C10_BG314157Ta13P043G10P017F021F1_076.ab1    80 
  185  C USDA025R_C10_BG314157Ta13P043G10P017F021R1_076.ab1   327 
  189    USDA025F_C10_BG314157Ta13P043G10P017F021F1_076.ab1   132 
  273  C USDA025R_C10_BG314157Ta13P043G10P017F021R1_076.ab1   239 
  301    USDA025F_C10_BG314157Ta13P043G10P017F021F1_076.ab1   244 
  313  C USDA025R_C10_BG314157Ta13P043G10P017F021R1_076.ab1   199 
  357    USDA025F_C10_BG314157Ta13P043G10P017F021F1_076.ab1   300 
  425  C USDA025R_C10_BG314157Ta13P043G10P017F021R1_076.ab1    87 
  441    USDA025F_C10_BG314157Ta13P043G10P017F021F1_076.ab1   384 
  457  C USDA025R_C10_BG314157Ta13P043G10P017F021R1_076.ab1    55 
  485    USDA025F_C10_BG314157Ta13P043G10P017F021F1_076.ab1   428 
Contig length: old 556, new 556

Contig length: old 556, new 556
New start: 0