No. words: 1026; after pruning: 1000


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:460)  440  0.65 0.22 0.00  USDA025F_F10_BG314157Ta16P043G10P017F021F1_070.ab1        1   461 (47)  C USDA025R_F10_BG314157Ta16P043G10P017F021R1_070.ab1   (56)   462     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C USDA025R_F10_BG314157Ta16P043G10P017F021R1_070.ab1   518 
  100    USDA025F_F10_BG314157Ta16P043G10P017F021F1_070.ab1    43 
  124  C USDA025R_F10_BG314157Ta16P043G10P017F021R1_070.ab1   395 
  132    USDA025F_F10_BG314157Ta16P043G10P017F021F1_070.ab1    75 
  140  C USDA025R_F10_BG314157Ta16P043G10P017F021R1_070.ab1   379 
  152    USDA025F_F10_BG314157Ta16P043G10P017F021F1_070.ab1    95 
  320  C USDA025R_F10_BG314157Ta16P043G10P017F021R1_070.ab1   199 
  336    USDA025F_F10_BG314157Ta16P043G10P017F021F1_070.ab1   279 
  400  C USDA025R_F10_BG314157Ta16P043G10P017F021R1_070.ab1   119 
  404    USDA025F_F10_BG314157Ta16P043G10P017F021F1_070.ab1   347 
Contig length: old 565, new 565

Contig length: old 565, new 565
New start: 0