No. words: 1028; after pruning: 1002


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:459)  448  0.00 0.22 0.00  USDA025F_A11_BG314157Ta19P043G10P017F021F1_095.ab1        1   460 (59)  C USDA025R_A11_BG314157Ta19P043G10P017F021R1_095.ab1   (48)   461     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C USDA025R_A11_BG314157Ta19P043G10P017F021R1_095.ab1   509 
  103    USDA025F_A11_BG314157Ta19P043G10P017F021F1_095.ab1    54 
  115  C USDA025R_A11_BG314157Ta19P043G10P017F021R1_095.ab1   395 
  139    USDA025F_A11_BG314157Ta19P043G10P017F021F1_095.ab1    90 
  183  C USDA025R_A11_BG314157Ta19P043G10P017F021R1_095.ab1   327 
  191    USDA025F_A11_BG314157Ta19P043G10P017F021F1_095.ab1   142 
  311  C USDA025R_A11_BG314157Ta19P043G10P017F021R1_095.ab1   199 
  331    USDA025F_A11_BG314157Ta19P043G10P017F021F1_095.ab1   282 
  335  C USDA025R_A11_BG314157Ta19P043G10P017F021R1_095.ab1   175 
  359    USDA025F_A11_BG314157Ta19P043G10P017F021F1_095.ab1   310 
  427  C USDA025R_A11_BG314157Ta19P043G10P017F021R1_095.ab1    83 
  439    USDA025F_A11_BG314157Ta19P043G10P017F021F1_095.ab1   390 
  451  C USDA025R_A11_BG314157Ta19P043G10P017F021R1_095.ab1    59 
  463    USDA025F_A11_BG314157Ta19P043G10P017F021F1_095.ab1   414 
Contig length: old 568, new 568

Contig length: old 568, new 568
New start: 0