No. words: 1031; after pruning: 1005


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.9 (1,1:462)  444  0.00 0.22 0.00  USDA025F_B11_BG314157Ta20P043G10P017F021F1_093.ab1        5   460 (60)  C USDA025R_B11_BG314157Ta20P043G10P017F021R1_093.ab1   (51)   460     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C USDA025R_B11_BG314157Ta20P043G10P017F021R1_093.ab1   511 
  209    USDA025F_B11_BG314157Ta20P043G10P017F021F1_093.ab1   161 
  245  C USDA025R_B11_BG314157Ta20P043G10P017F021R1_093.ab1   267 
  353    USDA025F_B11_BG314157Ta20P043G10P017F021F1_093.ab1   305 
  365  C USDA025R_B11_BG314157Ta20P043G10P017F021R1_093.ab1   147 
  393    USDA025F_B11_BG314157Ta20P043G10P017F021F1_093.ab1   345 
  397  C USDA025R_B11_BG314157Ta20P043G10P017F021R1_093.ab1   115 
  401    USDA025F_B11_BG314157Ta20P043G10P017F021F1_093.ab1   353 
  425  C USDA025R_B11_BG314157Ta20P043G10P017F021R1_093.ab1    87 
  441    USDA025F_B11_BG314157Ta20P043G10P017F021F1_093.ab1   393 
  449  C USDA025R_B11_BG314157Ta20P043G10P017F021R1_093.ab1    63 
  481    USDA025F_B11_BG314157Ta20P043G10P017F021F1_093.ab1   433 
Contig length: old 568, new 568

Contig length: old 568, new 568
New start: 0