No. words: 1023; after pruning: 997


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.4 (1,1:468)  451  0.00 0.22 0.00  USDA025F_D11_BG314157Ta22P043G10P017F021F1_089.ab1        5   467 (46)  C USDA025R_D11_BG314157Ta22P043G10P017F021R1_089.ab1   (44)   466     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C USDA025R_D11_BG314157Ta22P043G10P017F021R1_089.ab1   510 
   93    USDA025F_D11_BG314157Ta22P043G10P017F021F1_089.ab1    52 
  129  C USDA025R_D11_BG314157Ta22P043G10P017F021R1_089.ab1   382 
  205    USDA025F_D11_BG314157Ta22P043G10P017F021F1_089.ab1   164 
  213  C USDA025R_D11_BG314157Ta22P043G10P017F021R1_089.ab1   298 
  357    USDA025F_D11_BG314157Ta22P043G10P017F021F1_089.ab1   316 
  361  C USDA025R_D11_BG314157Ta22P043G10P017F021R1_089.ab1   150 
  365    USDA025F_D11_BG314157Ta22P043G10P017F021F1_089.ab1   324 
  377  C USDA025R_D11_BG314157Ta22P043G10P017F021R1_089.ab1   134 
  401    USDA025F_D11_BG314157Ta22P043G10P017F021F1_089.ab1   360 
  421  C USDA025R_D11_BG314157Ta22P043G10P017F021R1_089.ab1    90 
  441    USDA025F_D11_BG314157Ta22P043G10P017F021F1_089.ab1   400 
  457  C USDA025R_D11_BG314157Ta22P043G10P017F021R1_089.ab1    54 
  481    USDA025F_D11_BG314157Ta22P043G10P017F021F1_089.ab1   440 
Contig length: old 554, new 554

Contig length: old 554, new 554
New start: 0