No. words: 1178; after pruning: 1152


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:531)  525  0.00 0.00 0.00  USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1        1   532 (60)  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   (54)   532     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   586 
   90    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1    36 
   94  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   493 
  102    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1    48 
  106  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   481 
  110    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1    56 
  114  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   473 
  118    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1    64 
  126  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   461 
  138    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1    84 
  142  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   445 
  174    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1   120 
  186  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   401 
  230    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1   176 
  294  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   293 
  298    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1   244 
  326  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   261 
  346    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1   292 
  358  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   229 
  390    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1   336 
  410  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   177 
  418    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1   364 
  458  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1   129 
  474    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1   420 
  554  C USDA010R_B03_BG314157Tu02P017F02P017F08R1_029.ab1    33 
  558    USDA010F_B03_BG314157Tu02P017F02P017F08F1_029.ab1   504 
Contig length: old 646, new 646

Contig length: old 646, new 646
New start: 0