No. words: 1078; after pruning: 1052


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.3 (1,1:379)  371  0.00 0.00 0.53  USDA005R3_B08_BG314205Ld04P004C03C09R3_062.ab1        2   381 (178)  C USDA005F3_B08_BG314205Ld04P004C03C09F3_062.ab1   (141)   378     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C USDA005F3_B08_BG314205Ld04P004C03C09F3_062.ab1   519 
  404    USDA005R3_B08_BG314205Ld04P004C03C09R3_062.ab1   264 
  420  C USDA005F3_B08_BG314205Ld04P004C03C09F3_062.ab1   100 
  428    USDA005R3_B08_BG314205Ld04P004C03C09R3_062.ab1   288 
  460  C USDA005F3_B08_BG314205Ld04P004C03C09F3_062.ab1    60 
  464    USDA005R3_B08_BG314205Ld04P004C03C09R3_062.ab1   324 
  468  C USDA005F3_B08_BG314205Ld04P004C03C09F3_062.ab1    52 
  476    USDA005R3_B08_BG314205Ld04P004C03C09R3_062.ab1   336 
Contig length: old 698, new 699

Contig length: old 699, new 699
New start: 0