No. words: 989; after pruning: 963


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:447)  436  0.00 0.00 0.00  USDA012F_C07_BG604540As01P004E06P004E12F1_059.ab1        1   448 (54)  C USDA012R_C07_BG604540As01P004E06P004E12R1_059.ab1   (39)   448     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C USDA012R_C07_BG604540As01P004E06P004E12R1_059.ab1   487 
  351    USDA012F_C07_BG604540As01P004E06P004E12F1_059.ab1   312 
  355  C USDA012R_C07_BG604540As01P004E06P004E12R1_059.ab1   133 
  391    USDA012F_C07_BG604540As01P004E06P004E12F1_059.ab1   352 
  399  C USDA012R_C07_BG604540As01P004E06P004E12R1_059.ab1    89 
  435    USDA012F_C07_BG604540As01P004E06P004E12F1_059.ab1   396 
Contig length: old 541, new 541

Contig length: old 541, new 541
New start: 0