No. words: 985; after pruning: 959


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:447)  436  0.00 0.00 0.00  USDA012F_D07_BG604540As02P004E06P004E12F1_057.ab1        1   448 (51)  C USDA012R_D07_BG604540As02P004E06P004E12R1_057.ab1   (38)   448     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C USDA012R_D07_BG604540As02P004E06P004E12R1_057.ab1   486 
  378    USDA012F_D07_BG604540As02P004E06P004E12F1_057.ab1   340 
  386  C USDA012R_D07_BG604540As02P004E06P004E12R1_057.ab1   101 
  402    USDA012F_D07_BG604540As02P004E06P004E12F1_057.ab1   364 
  414  C USDA012R_D07_BG604540As02P004E06P004E12R1_057.ab1    73 
  438    USDA012F_D07_BG604540As02P004E06P004E12F1_057.ab1   400 
  450  C USDA012R_D07_BG604540As02P004E06P004E12R1_057.ab1    37 
  454    USDA012F_D07_BG604540As02P004E06P004E12F1_057.ab1   416 
Contig length: old 537, new 537

Contig length: old 537, new 537
New start: 0