No. words: 1661; after pruning: 1635


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.6 (1,1:792)  763  0.00 0.13 0.13  USDA012F_F07_BG604540At02P004E06P004E12F1_053.ab1        1   793 (37)  C USDA012R_F07_BG604540At02P004E06P004E12R1_053.ab1   (38)   793     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C USDA012R_F07_BG604540At02P004E06P004E12R1_053.ab1   831 
   59    USDA012F_F07_BG604540At02P004E06P004E12F1_053.ab1    20 
   91  C USDA012R_F07_BG604540At02P004E06P004E12R1_053.ab1   741 
  118    USDA012F_F07_BG604540At02P004E06P004E12F1_053.ab1    80 
  134  C USDA012R_F07_BG604540At02P004E06P004E12R1_053.ab1   698 
  142    USDA012F_F07_BG604540At02P004E06P004E12F1_053.ab1   104 
  158  C USDA012R_F07_BG604540At02P004E06P004E12R1_053.ab1   674 
  166    USDA012F_F07_BG604540At02P004E06P004E12F1_053.ab1   128 
  178  C USDA012R_F07_BG604540At02P004E06P004E12R1_053.ab1   654 
  182    USDA012F_F07_BG604540At02P004E06P004E12F1_053.ab1   144 
  190  C USDA012R_F07_BG604540At02P004E06P004E12R1_053.ab1   642 
  194    USDA012F_F07_BG604540At02P004E06P004E12F1_053.ab1   156 
  198  C USDA012R_F07_BG604540At02P004E06P004E12R1_053.ab1   634 
  242    USDA012F_F07_BG604540At02P004E06P004E12F1_053.ab1   204 
  250  C USDA012R_F07_BG604540At02P004E06P004E12R1_053.ab1   582 
  822    USDA012F_F07_BG604540At02P004E06P004E12F1_053.ab1   784 
Contig length: old 868, new 868

Contig length: old 868, new 868
New start: 0