No. words: 1220; after pruning: 1194


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:446)  435  0.00 0.00 0.00  USDA012F_C08_BG604540Ld05P004E06P004E12F1_060.ab1        1   447 (183)  C USDA012R_C08_BG604540Ld05P004E06P004E12R1_060.ab1   (143)   447     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C USDA012R_C08_BG604540Ld05P004E06P004E12R1_060.ab1   590 
  455    USDA012F_C08_BG604540Ld05P004E06P004E12F1_060.ab1   312 
  459  C USDA012R_C08_BG604540Ld05P004E06P004E12R1_060.ab1   132 
  487    USDA012F_C08_BG604540Ld05P004E06P004E12F1_060.ab1   344 
  503  C USDA012R_C08_BG604540Ld05P004E06P004E12R1_060.ab1    88 
  507    USDA012F_C08_BG604540Ld05P004E06P004E12F1_060.ab1   364 
  519  C USDA012R_C08_BG604540Ld05P004E06P004E12R1_060.ab1    72 
  543    USDA012F_C08_BG604540Ld05P004E06P004E12F1_060.ab1   400 
Contig length: old 773, new 773

Contig length: old 773, new 773
New start: 0