No. words: 1217; after pruning: 1191


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:446)  435  0.00 0.00 0.00  USDA012F_E08_BG604540Ld07P004E06P004E12F1_056.ab1        1   447 (183)  C USDA012R_E08_BG604540Ld07P004E06P004E12R1_056.ab1   (140)   447     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C USDA012R_E08_BG604540Ld07P004E06P004E12R1_056.ab1   587 
  428    USDA012F_E08_BG604540Ld07P004E06P004E12F1_056.ab1   288 
  432  C USDA012R_E08_BG604540Ld07P004E06P004E12R1_056.ab1   156 
  492    USDA012F_E08_BG604540Ld07P004E06P004E12F1_056.ab1   352 
  500  C USDA012R_E08_BG604540Ld07P004E06P004E12R1_056.ab1    88 
  504    USDA012F_E08_BG604540Ld07P004E06P004E12F1_056.ab1   364 
  516  C USDA012R_E08_BG604540Ld07P004E06P004E12R1_056.ab1    72 
  540    USDA012F_E08_BG604540Ld07P004E06P004E12F1_056.ab1   400 
Contig length: old 770, new 770

Contig length: old 770, new 770
New start: 0