No. words: 1219; after pruning: 1193


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:445)  430  0.00 0.22 0.00  USDA012F_F08_BG604540Ld08P004E06P004E12F1_054.ab1        1   446 (183)  C USDA012R_F08_BG604540Ld08P004E06P004E12R1_054.ab1   (143)   447     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C USDA012R_F08_BG604540Ld08P004E06P004E12R1_054.ab1   590 
  455    USDA012F_F08_BG604540Ld08P004E06P004E12F1_054.ab1   311 
  459  C USDA012R_F08_BG604540Ld08P004E06P004E12R1_054.ab1   132 
  483    USDA012F_F08_BG604540Ld08P004E06P004E12F1_054.ab1   339 
  487  C USDA012R_F08_BG604540Ld08P004E06P004E12R1_054.ab1   104 
  495    USDA012F_F08_BG604540Ld08P004E06P004E12F1_054.ab1   351 
  503  C USDA012R_F08_BG604540Ld08P004E06P004E12R1_054.ab1    88 
  507    USDA012F_F08_BG604540Ld08P004E06P004E12F1_054.ab1   363 
  519  C USDA012R_F08_BG604540Ld08P004E06P004E12R1_054.ab1    72 
  543    USDA012F_F08_BG604540Ld08P004E06P004E12F1_054.ab1   399 
  559  C USDA012R_F08_BG604540Ld08P004E06P004E12R1_054.ab1    32 
  567    USDA012F_F08_BG604540Ld08P004E06P004E12F1_054.ab1   423 
Contig length: old 773, new 773

Contig length: old 773, new 773
New start: 0