No. words: 1234; after pruning: 1208


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:452)  440  0.00 0.00 0.00  USDA012F_G08_BG604540Ld09P004E06P004E12F1_052.ab1        1   453 (194)  C USDA012R_G08_BG604540Ld09P004E06P004E12R1_052.ab1   (134)   453     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C USDA012R_G08_BG604540Ld09P004E06P004E12R1_052.ab1   587 
  426    USDA012F_G08_BG604540Ld09P004E06P004E12F1_052.ab1   292 
  430  C USDA012R_G08_BG604540Ld09P004E06P004E12R1_052.ab1   158 
  482    USDA012F_G08_BG604540Ld09P004E06P004E12F1_052.ab1   348 
  486  C USDA012R_G08_BG604540Ld09P004E06P004E12R1_052.ab1   102 
  490    USDA012F_G08_BG604540Ld09P004E06P004E12F1_052.ab1   356 
  498  C USDA012R_G08_BG604540Ld09P004E06P004E12R1_052.ab1    90 
  506    USDA012F_G08_BG604540Ld09P004E06P004E12F1_052.ab1   372 
  510  C USDA012R_G08_BG604540Ld09P004E06P004E12R1_052.ab1    78 
  542    USDA012F_G08_BG604540Ld09P004E06P004E12F1_052.ab1   408 
Contig length: old 781, new 781

Contig length: old 781, new 781
New start: 0