No. words: 1651; after pruning: 1597


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.6 (1,1:798)  770  0.25 0.00 0.13  USDA012F_H08_BG604540Ld10P004E06P004E12F1_050.ab1        1   799 (37)  C USDA012R_H08_BG604540Ld10P004E06P004E12R1_050.ab1   (17)   798     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1  C USDA012R_H08_BG604540Ld10P004E06P004E12R1_050.ab1   815 
   21    USDA012F_H08_BG604540Ld10P004E06P004E12F1_050.ab1     4 
   53  C USDA012R_H08_BG604540Ld10P004E06P004E12R1_050.ab1   763 
   57    USDA012F_H08_BG604540Ld10P004E06P004E12F1_050.ab1    40 
   73  C USDA012R_H08_BG604540Ld10P004E06P004E12R1_050.ab1   743 
   80    USDA012F_H08_BG604540Ld10P004E06P004E12F1_050.ab1    64 
  112  C USDA012R_H08_BG604540Ld10P004E06P004E12R1_050.ab1   704 
  116    USDA012F_H08_BG604540Ld10P004E06P004E12F1_050.ab1   100 
  208  C USDA012R_H08_BG604540Ld10P004E06P004E12R1_050.ab1   608 
  212    USDA012F_H08_BG604540Ld10P004E06P004E12F1_050.ab1   196 
  220  C USDA012R_H08_BG604540Ld10P004E06P004E12R1_050.ab1   596 
  228    USDA012F_H08_BG604540Ld10P004E06P004E12F1_050.ab1   212 
  240  C USDA012R_H08_BG604540Ld10P004E06P004E12R1_050.ab1   576 
  252    USDA012F_H08_BG604540Ld10P004E06P004E12F1_050.ab1   236 
  260  C USDA012R_H08_BG604540Ld10P004E06P004E12R1_050.ab1   556 
  356    USDA012F_H08_BG604540Ld10P004E06P004E12F1_050.ab1   340 
  360  C USDA012R_H08_BG604540Ld10P004E06P004E12R1_050.ab1   456 
  440    USDA012F_H08_BG604540Ld10P004E06P004E12F1_050.ab1   424 
  472  C USDA012R_H08_BG604540Ld10P004E06P004E12R1_050.ab1   344 
  812    USDA012F_H08_BG604540Ld10P004E06P004E12F1_050.ab1   796 
Contig length: old 852, new 852

Contig length: old 852, new 852
New start: 0 
S Change at: 61; seg lengths: entry 1, contig 1