No. words: 1691; after pruning: 1665


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.8 (1,1:803)  774  0.00 0.12 0.12  USDA012F_B07_BG604540Tu02P004E06P004E12F1_061.ab1        1   804 (44)  C USDA012R_B07_BG604540Tu02P004E06P004E12R1_061.ab1   (39)   804     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1  C USDA012R_B07_BG604540Tu02P004E06P004E12R1_061.ab1   843 
   65    USDA012F_B07_BG604540Tu02P004E06P004E12F1_061.ab1    25 
   93  C USDA012R_B07_BG604540Tu02P004E06P004E12R1_061.ab1   751 
  126    USDA012F_B07_BG604540Tu02P004E06P004E12F1_061.ab1    87 
  130  C USDA012R_B07_BG604540Tu02P004E06P004E12R1_061.ab1   714 
  142    USDA012F_B07_BG604540Tu02P004E06P004E12F1_061.ab1   103 
  170  C USDA012R_B07_BG604540Tu02P004E06P004E12R1_061.ab1   674 
  182    USDA012F_B07_BG604540Tu02P004E06P004E12F1_061.ab1   143 
  186  C USDA012R_B07_BG604540Tu02P004E06P004E12R1_061.ab1   658 
  190    USDA012F_B07_BG604540Tu02P004E06P004E12F1_061.ab1   151 
  202  C USDA012R_B07_BG604540Tu02P004E06P004E12R1_061.ab1   642 
  214    USDA012F_B07_BG604540Tu02P004E06P004E12F1_061.ab1   175 
  226  C USDA012R_B07_BG604540Tu02P004E06P004E12R1_061.ab1   618 
  250    USDA012F_B07_BG604540Tu02P004E06P004E12F1_061.ab1   211 
  258  C USDA012R_B07_BG604540Tu02P004E06P004E12R1_061.ab1   586 
  822    USDA012F_B07_BG604540Tu02P004E06P004E12F1_061.ab1   783 
  826  C USDA012R_B07_BG604540Tu02P004E06P004E12R1_061.ab1    18 
  830    USDA012F_B07_BG604540Tu02P004E06P004E12F1_061.ab1   791 
Contig length: old 887, new 887

Contig length: old 887, new 887
New start: 0