No. words: 833; after pruning: 807


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.1 (1,1:456)  288  3.87 0.00 0.00  USDA008F_C01_BG606986As01P017C04P017C10F1_011.ab1        1   336 (0)  C USDA008R_C01_BG606986As01P017C04P017C10R1_011.ab1   (40)   457   122 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  146 nodes

 75 str. conn. components

Path
    1  C USDA008R_C01_BG606986As01P017C04P017C10R1_011.ab1   497 
Contig length: old 497, new 497

Contig length: old 497, new 497
New start: 0