No. words: 887; after pruning: 861


Histogram of relative pair offsets, for read pairs with multiple alignments:
90     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -387  -458  0 40    205     E -204- 0
Fail: (1)  205   -0.7 -0.7 (1,1:458)  143  6.56 0.00 0.00  USDA008F_D01_BG606986As02P017C04P017C10F1_009.ab1       72   254 (245)  C USDA008R_D01_BG606986As02P017C04P017C10R1_009.ab1   (0)   388   206 *
 0  4  387 502    279     S 4- 282
Fail: (1)  279   -2.2 -2.2 (1,1:-4)   64 12.38 0.00 0.00  USDA008F_D01_BG606986As02P017C04P017C10F1_009.ab1      280   384 (115)    USDA008R_D01_BG606986As02P017C04P017C10R1_009.ab1      284   388 (0)  

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.7       0        1
-2.2       0        1

Gap   # merges  # failures
 size
205       0        1
279       0        1

Offset
  0       2 

Read equivalence class histogram:
    1    2

Chimera merges: 

Merge:(0)  205    0.0 0.6 (1,1:458)  143  6.56 0.00 0.00  USDA008F_D01_BG606986As02P017C04P017C10F1_009.ab1       72   254 (245)  C USDA008R_D01_BG606986As02P017C04P017C10R1_009.ab1   (0)   388   206 *

Contig 1:  58 nodes

 31 str. conn. components

Path
    1    USDA008F_D01_BG606986As02P017C04P017C10F1_009.ab1     1 
  165  C USDA008R_D01_BG606986As02P017C04P017C10R1_009.ab1   295 
  173    USDA008F_D01_BG606986As02P017C04P017C10F1_009.ab1   173 
  185  C USDA008R_D01_BG606986As02P017C04P017C10R1_009.ab1   275 
Contig length: old 499, new 459

Contig length: old 459, new 459
New start: 0 
S Change at: 220; seg lengths: entry 1, contig 1