No. words: 1127; after pruning: 1101


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:408)  392  0.00 0.00 0.24  USDA008F_H01_BG606986Ld02P017C04P017C10F1_001.ab1        1   409 (142)  C USDA008R_H01_BG606986Ld02P017C04P017C10R1_001.ab1   (168)   408     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1  C USDA008R_H01_BG606986Ld02P017C04P017C10R1_001.ab1   576 
  232    USDA008F_H01_BG606986Ld02P017C04P017C10F1_001.ab1    64 
  236  C USDA008R_H01_BG606986Ld02P017C04P017C10R1_001.ab1   341 
  488    USDA008F_H01_BG606986Ld02P017C04P017C10F1_001.ab1   320 
  492  C USDA008R_H01_BG606986Ld02P017C04P017C10R1_001.ab1    85 
  516    USDA008F_H01_BG606986Ld02P017C04P017C10F1_001.ab1   348 
Contig length: old 718, new 719

Contig length: old 719, new 719
New start: 0