No. words: 1242; after pruning: 1216


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.3 (1,1:581)  559  0.17 0.17 0.17  USDA014F_C11_BG607036As01P032H03P032H09F1_091.ab1        2   582 (34)  C USDA014R_C11_BG607036As01P032H03P032H09R1_091.ab1   (45)   581     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA014R_C11_BG607036As01P032H03P032H09R1_091.ab1   626 
   49    USDA014F_C11_BG607036As01P032H03P032H09F1_091.ab1     5 
   53  C USDA014R_C11_BG607036As01P032H03P032H09R1_091.ab1   574 
   57    USDA014F_C11_BG607036As01P032H03P032H09F1_091.ab1    13 
  593  C USDA014R_C11_BG607036As01P032H03P032H09R1_091.ab1    34 
  606    USDA014F_C11_BG607036As01P032H03P032H09F1_091.ab1   561 
Contig length: old 660, new 661

Contig length: old 661, new 661
New start: 0