No. words: 1236; after pruning: 1210


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 10.6 (1,1:580)  557  0.00 0.00 0.17  USDA014F_E11_BG607036At01P032H03P032H09F1_087.ab1        9   581 (32)  C USDA014R_E11_BG607036At01P032H03P032H09R1_087.ab1   (51)   572     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C USDA014R_E11_BG607036At01P032H03P032H09R1_087.ab1   623 
   60    USDA014F_E11_BG607036At01P032H03P032H09F1_087.ab1    17 
   80  C USDA014R_E11_BG607036At01P032H03P032H09R1_087.ab1   544 
   92    USDA014F_E11_BG607036At01P032H03P032H09F1_087.ab1    49 
  100  C USDA014R_E11_BG607036At01P032H03P032H09R1_087.ab1   524 
  104    USDA014F_E11_BG607036At01P032H03P032H09F1_087.ab1    61 
  112  C USDA014R_E11_BG607036At01P032H03P032H09R1_087.ab1   512 
  116    USDA014F_E11_BG607036At01P032H03P032H09F1_087.ab1    73 
  140  C USDA014R_E11_BG607036At01P032H03P032H09R1_087.ab1   484 
  144    USDA014F_E11_BG607036At01P032H03P032H09F1_087.ab1   101 
  192  C USDA014R_E11_BG607036At01P032H03P032H09R1_087.ab1   432 
  196    USDA014F_E11_BG607036At01P032H03P032H09F1_087.ab1   153 
  560  C USDA014R_E11_BG607036At01P032H03P032H09R1_087.ab1    64 
  568    USDA014F_E11_BG607036At01P032H03P032H09F1_087.ab1   525 
Contig length: old 655, new 656

Contig length: old 656, new 656
New start: 0