No. words: 1460; after pruning: 1434


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 6.1 (1,1:585)  557  0.00 0.17 0.17  USDA014F_G11_BG607036Ld01P032H03P032H09F1_083.ab1       11   586 (154)  C USDA014R_G11_BG607036Ld01P032H03P032H09R1_083.ab1   (144)   576     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C USDA014R_G11_BG607036Ld01P032H03P032H09R1_083.ab1   720 
  168    USDA014F_G11_BG607036Ld01P032H03P032H09F1_083.ab1    33 
  176  C USDA014R_G11_BG607036Ld01P032H03P032H09R1_083.ab1   545 
  184    USDA014F_G11_BG607036Ld01P032H03P032H09F1_083.ab1    49 
  196  C USDA014R_G11_BG607036Ld01P032H03P032H09R1_083.ab1   525 
  376    USDA014F_G11_BG607036Ld01P032H03P032H09F1_083.ab1   241 
  620  C USDA014R_G11_BG607036Ld01P032H03P032H09R1_083.ab1   101 
  624    USDA014F_G11_BG607036Ld01P032H03P032H09F1_083.ab1   489 
  632  C USDA014R_G11_BG607036Ld01P032H03P032H09R1_083.ab1    89 
  672    USDA014F_G11_BG607036Ld01P032H03P032H09F1_083.ab1   537 
  684  C USDA014R_G11_BG607036Ld01P032H03P032H09R1_083.ab1    37 
  700    USDA014F_G11_BG607036Ld01P032H03P032H09F1_083.ab1   565 
  704  C USDA014R_G11_BG607036Ld01P032H03P032H09R1_083.ab1    17 
  708    USDA014F_G11_BG607036Ld01P032H03P032H09F1_083.ab1   573 
Contig length: old 874, new 875

Contig length: old 875, new 875
New start: 0