No. words: 1393; after pruning: 1353


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:521)  499  0.57 0.00 0.19  USDA014F_B12_BG607036Ld04P032H03P032H09F1_094.ab1        1   522 (151)  C USDA014R_B12_BG607036Ld04P032H03P032H09R1_094.ab1   (199)   521     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C USDA014R_B12_BG607036Ld04P032H03P032H09R1_094.ab1   720 
  375    USDA014F_B12_BG607036Ld04P032H03P032H09F1_094.ab1   176 
  379  C USDA014R_B12_BG607036Ld04P032H03P032H09R1_094.ab1   342 
  515    USDA014F_B12_BG607036Ld04P032H03P032H09F1_094.ab1   316 
  547  C USDA014R_B12_BG607036Ld04P032H03P032H09R1_094.ab1   174 
  583    USDA014F_B12_BG607036Ld04P032H03P032H09F1_094.ab1   384 
  587  C USDA014R_B12_BG607036Ld04P032H03P032H09R1_094.ab1   134 
  591    USDA014F_B12_BG607036Ld04P032H03P032H09F1_094.ab1   392 
  595  C USDA014R_B12_BG607036Ld04P032H03P032H09R1_094.ab1   126 
  675    USDA014F_B12_BG607036Ld04P032H03P032H09F1_094.ab1   476 
  679  C USDA014R_B12_BG607036Ld04P032H03P032H09R1_094.ab1    42 
  683    USDA014F_B12_BG607036Ld04P032H03P032H09F1_094.ab1   484 
  687  C USDA014R_B12_BG607036Ld04P032H03P032H09R1_094.ab1    34 
  707    USDA014F_B12_BG607036Ld04P032H03P032H09F1_094.ab1   508 
Contig length: old 871, new 872

Contig length: old 872, new 872
New start: 0 
S Change at: 96; seg lengths: entry 1, contig 1