No. words: 1446; after pruning: 1420


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 11.0 (1,1:579)  555  0.35 0.00 0.17  USDA014F_C12_BG607036Ld05P032H03P032H09F1_092.ab1        5   580 (149)  C USDA014R_C12_BG607036Ld05P032H03P032H09R1_092.ab1   (142)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA014R_C12_BG607036Ld05P032H03P032H09R1_092.ab1   717 
  366    USDA014F_C12_BG607036Ld05P032H03P032H09F1_092.ab1   228 
  406  C USDA014R_C12_BG607036Ld05P032H03P032H09R1_092.ab1   312 
  542    USDA014F_C12_BG607036Ld05P032H03P032H09F1_092.ab1   404 
  594  C USDA014R_C12_BG607036Ld05P032H03P032H09R1_092.ab1   124 
  606    USDA014F_C12_BG607036Ld05P032H03P032H09F1_092.ab1   468 
  610  C USDA014R_C12_BG607036Ld05P032H03P032H09R1_092.ab1   108 
  618    USDA014F_C12_BG607036Ld05P032H03P032H09F1_092.ab1   480 
  622  C USDA014R_C12_BG607036Ld05P032H03P032H09R1_092.ab1    96 
  670    USDA014F_C12_BG607036Ld05P032H03P032H09F1_092.ab1   532 
  674  C USDA014R_C12_BG607036Ld05P032H03P032H09R1_092.ab1    44 
  702    USDA014F_C12_BG607036Ld05P032H03P032H09F1_092.ab1   564 
Contig length: old 866, new 867

Contig length: old 867, new 867
New start: 0