No. words: 1433; after pruning: 1407


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 11.6 (1,1:565)  552  0.00 0.00 0.00  USDA014F_D12_BG607036Ld06P032H03P032H09F1_090.ab1        5   566 (163)  C USDA014R_D12_BG607036Ld06P032H03P032H09R1_090.ab1   (142)   562     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C USDA014R_D12_BG607036Ld06P032H03P032H09R1_090.ab1   704 
  368    USDA014F_D12_BG607036Ld06P032H03P032H09F1_090.ab1   230 
  408  C USDA014R_D12_BG607036Ld06P032H03P032H09R1_090.ab1   297 
  580    USDA014F_D12_BG607036Ld06P032H03P032H09F1_090.ab1   442 
  592  C USDA014R_D12_BG607036Ld06P032H03P032H09R1_090.ab1   113 
  616    USDA014F_D12_BG607036Ld06P032H03P032H09F1_090.ab1   478 
  624  C USDA014R_D12_BG607036Ld06P032H03P032H09R1_090.ab1    81 
  664    USDA014F_D12_BG607036Ld06P032H03P032H09F1_090.ab1   526 
  676  C USDA014R_D12_BG607036Ld06P032H03P032H09R1_090.ab1    29 
  692    USDA014F_D12_BG607036Ld06P032H03P032H09F1_090.ab1   554 
  696  C USDA014R_D12_BG607036Ld06P032H03P032H09R1_090.ab1     9 
  700    USDA014F_D12_BG607036Ld06P032H03P032H09F1_090.ab1   562 
Contig length: old 867, new 867

Contig length: old 867, new 867
New start: 0