No. words: 899; after pruning: 873


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 2.2 (1,1:409)  380  0.00 0.24 0.49  USDA020F_F02_BG607036Ta14P043B01P032H031F1_006.ab1        1   409 (38)  C USDA020R_F02_BG607036Ta14P043B01P032H031R1_006.ab1   (42)   410     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1  C USDA020R_F02_BG607036Ta14P043B01P032H031R1_006.ab1   452 
  216    USDA020F_F02_BG607036Ta14P043B01P032H031F1_006.ab1   173 
  224  C USDA020R_F02_BG607036Ta14P043B01P032H031R1_006.ab1   229 
  296    USDA020F_F02_BG607036Ta14P043B01P032H031F1_006.ab1   253 
  300  C USDA020R_F02_BG607036Ta14P043B01P032H031R1_006.ab1   153 
  348    USDA020F_F02_BG607036Ta14P043B01P032H031F1_006.ab1   305 
  364  C USDA020R_F02_BG607036Ta14P043B01P032H031R1_006.ab1    89 
  380    USDA020F_F02_BG607036Ta14P043B01P032H031F1_006.ab1   337 
  388  C USDA020R_F02_BG607036Ta14P043B01P032H031R1_006.ab1    65 
  400    USDA020F_F02_BG607036Ta14P043B01P032H031F1_006.ab1   357 
Contig length: old 489, new 490

Contig length: old 490, new 490
New start: 0