No. words: 898; after pruning: 872


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 3.1 (1,1:403)  375  0.00 0.25 0.00  USDA020F_F01_BG607036Td06P043B01P032H031F1_005.ab1        1   395 (52)  C USDA020R_F01_BG607036Td06P043B01P032H031R1_005.ab1   (46)   405    10 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1  C USDA020R_F01_BG607036Td06P043B01P032H031R1_005.ab1   451 
  348    USDA020F_F01_BG607036Td06P043B01P032H031F1_005.ab1   301 
  400  C USDA020R_F01_BG607036Td06P043B01P032H031R1_005.ab1    52 
  404    USDA020F_F01_BG607036Td06P043B01P032H031F1_005.ab1   357 
  412  C USDA020R_F01_BG607036Td06P043B01P032H031R1_005.ab1    40 
  416    USDA020F_F01_BG607036Td06P043B01P032H031F1_005.ab1   369 
  420  C USDA020R_F01_BG607036Td06P043B01P032H031R1_005.ab1    32 
  424    USDA020F_F01_BG607036Td06P043B01P032H031F1_005.ab1   377 
Contig length: old 494, new 494

Contig length: old 494, new 494
New start: 0