No. words: 1192; after pruning: 1166


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.6 (1,1:556)  542  0.18 0.00 0.00  USDA014F_A11_BG607036Tu01P032H03P032H09F1_095.ab1        5   557 (33)  C USDA014R_A11_BG607036Tu01P032H03P032H09R1_095.ab1   (49)   553     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C USDA014R_A11_BG607036Tu01P032H03P032H09R1_095.ab1   602 
  145    USDA014F_A11_BG607036Tu01P032H03P032H09F1_095.ab1   100 
  157  C USDA014R_A11_BG607036Tu01P032H03P032H09R1_095.ab1   446 
  217    USDA014F_A11_BG607036Tu01P032H03P032H09F1_095.ab1   172 
  225  C USDA014R_A11_BG607036Tu01P032H03P032H09R1_095.ab1   378 
  229    USDA014F_A11_BG607036Tu01P032H03P032H09F1_095.ab1   184 
  281  C USDA014R_A11_BG607036Tu01P032H03P032H09R1_095.ab1   322 
  285    USDA014F_A11_BG607036Tu01P032H03P032H09F1_095.ab1   240 
  297  C USDA014R_A11_BG607036Tu01P032H03P032H09R1_095.ab1   306 
  305    USDA014F_A11_BG607036Tu01P032H03P032H09F1_095.ab1   260 
  497  C USDA014R_A11_BG607036Tu01P032H03P032H09R1_095.ab1   106 
  505    USDA014F_A11_BG607036Tu01P032H03P032H09F1_095.ab1   460 
  513  C USDA014R_A11_BG607036Tu01P032H03P032H09R1_095.ab1    90 
  517    USDA014F_A11_BG607036Tu01P032H03P032H09F1_095.ab1   472 
  533  C USDA014R_A11_BG607036Tu01P032H03P032H09R1_095.ab1    70 
  545    USDA014F_A11_BG607036Tu01P032H03P032H09F1_095.ab1   500 
  549  C USDA014R_A11_BG607036Tu01P032H03P032H09R1_095.ab1    54 
  557    USDA014F_A11_BG607036Tu01P032H03P032H09F1_095.ab1   512 
  573  C USDA014R_A11_BG607036Tu01P032H03P032H09R1_095.ab1    30 
  581    USDA014F_A11_BG607036Tu01P032H03P032H09F1_095.ab1   536 
Contig length: old 635, new 635

Contig length: old 635, new 635
New start: 0