No. words: 1194; after pruning: 1154


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:557)  544  0.18 0.00 0.18  USDA014F_B11_BG607036Tu02P032H03P032H09F1_093.ab1        1   558 (35)  C USDA014R_B11_BG607036Tu02P032H03P032H09R1_093.ab1   (44)   557     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C USDA014R_B11_BG607036Tu02P032H03P032H09R1_093.ab1   601 
   60    USDA014F_B11_BG607036Tu02P032H03P032H09F1_093.ab1    16 
   88  C USDA014R_B11_BG607036Tu02P032H03P032H09R1_093.ab1   514 
  104    USDA014F_B11_BG607036Tu02P032H03P032H09F1_093.ab1    60 
  116  C USDA014R_B11_BG607036Tu02P032H03P032H09R1_093.ab1   486 
  120    USDA014F_B11_BG607036Tu02P032H03P032H09F1_093.ab1    76 
  160  C USDA014R_B11_BG607036Tu02P032H03P032H09R1_093.ab1   442 
  164    USDA014F_B11_BG607036Tu02P032H03P032H09F1_093.ab1   120 
  232  C USDA014R_B11_BG607036Tu02P032H03P032H09R1_093.ab1   370 
  236    USDA014F_B11_BG607036Tu02P032H03P032H09F1_093.ab1   192 
  296  C USDA014R_B11_BG607036Tu02P032H03P032H09R1_093.ab1   306 
  300    USDA014F_B11_BG607036Tu02P032H03P032H09F1_093.ab1   256 
  484  C USDA014R_B11_BG607036Tu02P032H03P032H09R1_093.ab1   118 
  503    USDA014F_B11_BG607036Tu02P032H03P032H09F1_093.ab1   459 
  535  C USDA014R_B11_BG607036Tu02P032H03P032H09R1_093.ab1    67 
  543    USDA014F_B11_BG607036Tu02P032H03P032H09F1_093.ab1   499 
  571  C USDA014R_B11_BG607036Tu02P032H03P032H09R1_093.ab1    31 
  583    USDA014F_B11_BG607036Tu02P032H03P032H09F1_093.ab1   539 
Contig length: old 636, new 637

Contig length: old 637, new 637
New start: 0